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Design gene panels, manage orders and explore your Molecular Cartography™ data using our web-based applications.

Customize Gene Panels

Start with your favourite genes and design new probe-sets in our Panel Design Studio to create your own custom panel ‐ perfectly suited to answer your biological reaseach question.

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Add Suggested Content

For human samples, we provide a target selection guide to quickly identify markers for cell-typing applications, backed by data obtained from the The Human Protein Atlas.

Simulate Expression

Create virtual heatmaps for your panel showing theoretical expression levels of genes across various human tissues and cell-types to fine-tune your selection.

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 Create your first custom Panel
Visualize Your Results

Explore gene expression in three dimensions.

Render transcripts in your sample's context!

In the full version, you can add images (DAPI-stained nuclei, any other post-staining method) and navigate through your sample to match morphology and molecular biology - online.

Rice Root, Calcofluor (blue)

ReCognize - Our all-in-one Solution

Launch the application below.
Navigation is done directly using the mouse (or trackpad). Hold the left mouse button and drag/move to adjust camera position and hold the right mouse button and drag/move to rotate. Scroll the mouse-wheel up to zoom in, or scroll it down to zoom out. Alternatively, the magnification can be adjusted by clicking the respective buttons.

Please refer to our  User Guide to learn how to use all the features!

Molecular CartographyTM platform

Empowers scientists to resolve the most daunting challenges in biology

Starting

Gene

Current color set: default

    Gene config

    Distance tools

    Gene info &
    Measure distance from transcript to transcript
    (Recommand : Radius in mm 0.0003)
    intersetion points: 0

      Quick visual switching


      ROIS

      Please select a ROI set to display.
      ROI sets can be added in the file manager.

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      -0.003

      Cluster

      UMAP


        Region Transcript Counter

        Selected transcripts: 0
        order by : |

        Images

        Please select an image set to display.
        Image can be uploaded in the file manager.

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        Capture

        Record screen and export as movie file

        Recording...
        Pan and rotate your tissue with the mouse
        Images
        Transcripts observation with real image.

        Cell outlines
        In the full version, you can upload multiple cell segment data to observe with genes in order to have a better data overview of your data.

        Cell cluster
        To gain insights into cell outlines, you have multiple parameter options in full version to color up the cells based on the cell cluster data.

        Explore more features in our full version.

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        Screen shot
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        Gain Insights

        Compare cells by function and location.

        Clustering & Cell Typing

        Perform cell-clustering running Seurat in our cloud backend, directly from your browser!

        In the full version you can adjust parameters like mininmal number of transcripts, number of dimensions to use, or subset the input to only consider selected genes for clustering.

        UMAP in 3D

        Plot cells according to their UMAP coordinates in three dimensions!

        Using three dimensions of the Uniform Manifold Approximation and Projection (UMAP) makes it much easier to identify and mark groups of interest. Selected cells will be highlighted in the main visualization to quickly compare functional and spatial relationships.

        Heatmap

        Compare gene expression across clusters to get a quick yet comprehensive overview!


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        (double click to drag a line)